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| Player | Team | Goals |
|---|---|---|
| J. Buryan | Mladá Boleslav U19 | 27 |
| L. Novotny | Slovácko U19 | 16 |
| S. Pikolon | Jindřichův Hradec | 14 |
| T. Gantogtokh | České Budějovice U19 | 14 |
| T. Zimmermann | Vysočina Jihlava U19 | 13 |
| A. Proniuk | Sigma Olomouc U19 | 12 |
| D. Baumgartner | Karviná U19 | 12 |
| F. Mikes | Dukla Praha U19 | 12 |
| S. Petruta | Zlín U19 | 12 |
| F. Vecera | Zbrojovka Brno U19 | 11 |
| L. Branecky | Zlín U19 | 11 |
| M. Strnad | Slovan Liberec U19 | 11 |
| O. Penxa | Sparta Praha U19 | 11 |
| D. Suchy | Viktoria Plzeň U19 | 9 |
| J. Stindl | České Budějovice U19 | 9 |
| K. Belzik | Jindřichův Hradec | 9 |
| D. Barat | Slovácko U19 | 8 |
| D. Svancara | Zbrojovka Brno U19 | 7 |
| F. Dornak | Zlín U19 | 7 |
| F. Papousek | Slovan Liberec U19 | 7 |
| J. Stryk | Sigma Olomouc U19 | 7 |
| J. Zika | České Budějovice U19 | 7 |
| M. Honomichl | Viktoria Plzeň U19 | 7 |
| M. Soucek | Zbrojovka Brno U19 | 7 |
| P. Kacor | Karviná U19 | 7 |
| T. Zaruba | Vysočina Jihlava U19 | 7 |
| V. Zahradnicek | Sigma Olomouc U19 | 7 |
| D. Kotrba | Sparta Praha U19 | 6 |
| D. Polasek | Zbrojovka Brno U19 | 6 |
| F. Podhorny | Baník Ostrava U19 | 6 |