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| Player | Team | Goals |
|---|---|---|
| A. Umar | Hradec Králové U19 | 25 |
| D. Lasek | Sparta Praha U19 | 16 |
| A. Chab | České Budějovice U19 | 13 |
| M. Zeman | České Budějovice U19 | 13 |
| R. Palan | Sigma Olomouc U19 | 13 |
| M. Gningue | Zlín U19 | 12 |
| S. Drozd | Baník Ostrava U19 | 12 |
| M. Kuhnel | Mladá Boleslav U19 | 11 |
| J. Ashuku | Slovan Liberec U19 | 10 |
| J. Korbel | Dukla Praha U19 | 10 |
| O. Akinwande | Karviná U19 | 10 |
| P. Potmesil | Slavia Praha U19 | 10 |
| D. Zajac | Baník Ostrava U19 | 9 |
| R. Betik | Zlín U19 | 9 |
| N. Chumlen | Viktoria Plzeň U19 | 8 |
| P. Nedved | Pardubice U19 | 8 |
| S. Ponikelsky | Hradec Králové U19 | 8 |
| V. Valosek | Karviná U19 | 8 |
| A. Eichler | Mladá Boleslav U19 | 7 |
| A. Novak | Viktoria Plzeň U19 | 7 |
| D. Holec | Vysočina Jihlava U19 | 7 |
| D. Satava | Hradec Králové U19 | 7 |
| F. Dolezel | Baník Ostrava U19 | 7 |
| M. Brazda | Zlín U19 | 7 |
| M. Kalabus | Slovácko U19 | 7 |
| M. Lasak | Slovácko U19 | 7 |
| P. Siegl | Sigma Olomouc U19 | 7 |
| A. Tusek | České Budějovice U19 | 6 |
| J. Smiga | Slavia Praha U19 | 6 |
| M. Beranek | Pardubice U19 | 6 |