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| Player | Team | Goals |
|---|---|---|
| P. Pejsa | Loko Vltavín | 21 |
| P. Muzik | Jiskra Domažlice | 19 |
| M. Kraus | Králův Dvůr | 14 |
| S. Kores | Písek | 14 |
| D. Smiga | Slavia Praha II | 11 |
| M. Doudera | Slavia Praha II | 11 |
| V. Vyleta | Karlovy Vary | 10 |
| M. Kalousek | Písek | 9 |
| J. Cerveny | Karlovy Vary | 9 |
| J. Mach | Králův Dvůr | 9 |
| M. Debellis | Karlovy Vary | 9 |
| D. Budinsky | Příbram II | 8 |
| J. Miker | Sokol Hostouň | 8 |
| M. Vanek | Motorlet Praha | 8 |
| P. Vandas | Slavoj Vyšehrad | 8 |
| A. Toula | Slavia Praha II | 7 |
| C. M. Maione | Loko Vltavín | 7 |
| D. Krlicka | Baník Sokolov | 7 |
| L. Vesely | Loko Vltavín | 7 |
| M. Cacha | Admira Praha | 7 |
| M. Kubes | Slavoj Vyšehrad | 7 |
| T. Docekal | Sokol Hostouň | 7 |
| A. Kronus | Viktoria Plzeň II | 6 |
| D. Martinec | Baník Sokolov | 6 |
| D. Zizala | Motorlet Praha | 6 |
| J. Michalek | Admira Praha | 6 |
| J. Mlika | Baník Sokolov | 6 |
| J. Suchan | Slavoj Vyšehrad | 6 |
| L. Volesak | Povltava FA | 6 |
| M. Usor | Slavia Praha II | 6 |