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| Player | Team | Goals |
|---|---|---|
| J. Beauguel | Plzen | 19 |
| V. Jurečka | Slovácko | 17 |
| L. Almási | Baník Ostrava | 16 |
| O. Lingr | Slavia Praha | 14 |
| Ewerton | Mlada Boleslav | 12 |
| D. Puškáč | Bohemians 1905 | 11 |
| D. Douděra | Mlada Boleslav | 10 |
| I. Schranz | Slavia Praha | 10 |
| A. Hložek | Sparta Praha | 9 |
| J. Kuchta | Slavia Praha | 9 |
| F. Bassey | České Budějovice | 9 |
| J. Rada | Hradec Králové | 9 |
| A. Vlkanova | Hradec Králové | 8 |
| Jiří Klíma | Baník Ostrava | 8 |
| J. Mosquera | Plzen | 7 |
| J. Pešek | Sparta Praha | 7 |
| D. Hancko | Sparta Praha | 7 |
| J. Chramosta | Bohemians 1905 | 7 |
| A. Růsek | Sigma Olomouc | 7 |
| N. Kuzmanovič | Baník Ostrava | 7 |
| P. Hronek | Bohemians 1905 | 7 |
| T. Poznar | Zlin | 7 |
| M. Pulkrab | Sparta Praha | 7 |
| T. Čvančara | Sparta Praha | 7 |
| J. Fortelný | Teplice | 6 |
| P. Olayinka | Slavia Praha | 6 |
| T. Chorý | Plzen | 6 |
| M. Papadopulos | Karviná | 6 |
| S. Tecl | Slavia Praha | 6 |
| D. Buchta | Baník Ostrava | 6 |