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| Player | Team | Goals |
|---|---|---|
| J. Kliment | Sigma Olomouc | 18 |
| P. Šulc | Plzen | 15 |
| T. Chorý | Slavia Praha | 14 |
| Ewerton | Baník Ostrava | 13 |
| F. Vecheta | Karviná | 13 |
| L. Haraslín | Sparta Praha | 11 |
| M. Vydra | Plzen | 10 |
| V. Kušej | Slavia Praha | 10 |
| M. Vojta | Mlada Boleslav | 10 |
| D. Višinský | Slovan Liberec | 9 |
| M. Chytil | Slavia Praha | 9 |
| M. Šín | Baník Ostrava | 8 |
| J. Chramosta | FK Jablonec | 8 |
| E. Prekop | Baník Ostrava | 8 |
| Abdulla Yusuf Helal | Bohemians 1905 | 8 |
| A. Vlkanova | Hradec Králové | 7 |
| A. Memić | Karviná | 7 |
| E. Diouf | Slavia Praha | 7 |
| J. Matoušek | Bohemians 1905 | 7 |
| J. Kuchta | Sparta Praha | 7 |
| D. Hollý | FK Jablonec | 7 |
| V. Olatunji | Sparta Praha | 7 |
| S. Nebyla | FK Jablonec | 6 |
| F. Kubala | Baník Ostrava | 6 |
| R. Durosinmi | Plzen | 6 |
| A. Gning | Teplice | 6 |
| D. Trubač | Teplice | 6 |
| D. Buchta | Baník Ostrava | 6 |
| R. Krollis | Slovan Liberec | 6 |
| V. Zeman | Bohemians 1905 | 6 |