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| Player | Team | Goals |
|---|---|---|
| M. Taylor | Bristol Rovers | 27 |
| J. Simpson | Leyton Orient | 25 |
| J. Akinde | Barnet | 22 |
| L. Taylor | AFC Wimbledon | 22 |
| B. Kee | Accrington ST | 17 |
| K. Roofe | Oxford United | 17 |
| J. Windass | Accrington ST | 16 |
| M. Green | Mansfield Town | 16 |
| J. Ibehre | Carlisle | 15 |
| S. Miller | Morecambe | 15 |
| M. Richards | Northampton | 15 |
| L. Sercombe | Oxford United | 14 |
| B. Paynter | Hartlepool | 14 |
| J. Marriott | Luton | 14 |
| B. Bodin | Bristol Rovers | 13 |
| S. Boden | Newport County | 13 |
| D. Hylton | Oxford United | 12 |
| L. Berry | Cambridge United | 12 |
| B. Williamson | Cambridge United | 12 |
| C. McGeehan | Luton | 12 |
| C. Wyke | Carlisle | 12 |
| B. Corr | Cambridge United | 12 |
| J. O'Toole | Northampton | 12 |
| G. Carey | Plymouth | 11 |
| J. Jervis | Plymouth | 11 |
| J. Stead | Notts County | 11 |
| M. McNulty | Portsmouth | 11 |
| G. Evans | Portsmouth | 11 |
| T. Nichols | Exeter City | 10 |
| J. Stockley | Exeter City | 10 |