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| Player | Team | Goals |
|---|---|---|
| M. Diagne | Mâcon | 25 |
| B. M'Backé N'Diayé | Sochaux II | 20 |
| A. Thoumin | Mâcon | 14 |
| H. Chergui | Besançon | 12 |
| A. Berriss | Jura Dolois | 11 |
| M. Puget | Selongey | 11 |
| Q. Maconda | Pontarlier | 11 |
| E. Moutault | Jura Dolois | 10 |
| J. Grebert | Union Cosnoise | 10 |
| J. Michelet | Saint-Apollinaire | 10 |
| M. Gaougaou | Quetigny | 10 |
| D. Glao | Dijon II | 9 |
| F. Miezi | Selongey | 9 |
| D. Da Silva | Besançon | 8 |
| J. Duarte | Union Cosnoise | 8 |
| J. Renaudin | Pontarlier | 8 |
| M. Lecolier | Sochaux II | 8 |
| A. Delphis | Sochaux II | 7 |
| J. Abbew Buckman | Grandvillars | 7 |
| M. Bonnet | Morteau Montlebon | 7 |
| N. Bertil | Dijon II | 7 |
| T. Journot | Morteau Montlebon | 7 |
| W. Misiak | Jura Dolois | 7 |
| A. Boughazi | Saint-Apollinaire | 6 |
| A. Rollin | Gueugnon | 6 |
| E. Nka Mbock Mananga | Gueugnon | 6 |
| Franck Revuelta | Gueugnon | 6 |
| K. Luanda Luvunu | Gueugnon | 6 |
| O. Stitou | Selongey | 6 |
| R. Chayebi | Pontarlier | 6 |