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| Player | Team | Goals |
|---|---|---|
| D. Kumbela | Eintracht Braunschweig | 19 |
| D. Ginczek | FC St. Pauli | 18 |
| Ronny | Hertha BSC | 18 |
| M. Idrissou | 1. FC Kaiserslautern | 17 |
| B. Sanogo | Energie Cottbus | 14 |
| A. Bunjaku | 1. FC Kaiserslautern | 13 |
| A. Ujah | FC Cologne | 13 |
| B. Lauth | TSV 1860 München | 12 |
| A. Ramos | Hertha BSC | 11 |
| D. Kruppke | Eintracht Braunschweig | 11 |
| E. Kapllani | FSV Frankfurt | 11 |
| F. Löning | SV Sandhausen | 11 |
| Caiuby | FC Ingolstadt 04 | 10 |
| J. Hochscheidt | Erzgebirge Aue | 10 |
| J. Verhoek | FSV Frankfurt | 10 |
| S. Terodde | Union Berlin | 10 |
| T. Mattuschka | Union Berlin | 10 |
| A. Nemec | Union Berlin | 9 |
| R. Lechleiter | VfR Aalen | 9 |
| F. Sembolo | SSV Jahn Regensburg | 8 |
| J. Sylvestr | Erzgebirge Aue | 8 |
| Z. Dedic | VfL Bochum | 8 |
| A. Wooten | SV Sandhausen | 7 |
| M. Dausch | VfR Aalen | 7 |
| P. Hofmann | Paderborn | 7 |
| S. Allagui | Hertha BSC | 7 |
| A. Meha | Paderborn | 6 |
| C. Clemens | FC Cologne | 6 |
| C. Eigler | FC Ingolstadt 04 | 6 |
| F. Bartels | FC St. Pauli | 6 |