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| Player | Team | Goals |
|---|---|---|
| J. Sylvestr | Erzgebirge Aue | 16 |
| M. Sağlık | Paderborn | 15 |
| I. Azemi | SpVgg Greuther Fürth | 14 |
| M. Idrissou | 1. FC Kaiserslautern | 13 |
| S. Zoller | 1. FC Kaiserslautern | 13 |
| A. Meha | Paderborn | 12 |
| C. Benschop | Fortuna Düsseldorf | 12 |
| P. Helmes | FC Cologne | 12 |
| T. Mattuschka | Union Berlin | 12 |
| A. Ujah | FC Cologne | 11 |
| E. Kapllani | FSV Frankfurt | 11 |
| S. Brandy | Union Berlin | 11 |
| B. Sanogo | Energie Cottbus | 10 |
| M. Leckie | FSV Frankfurt | 10 |
| R. Hennings | Karlsruher SC | 10 |
| E. Hoffer | Fortuna Düsseldorf | 9 |
| F. Klos | Arminia Bielefeld | 9 |
| M. Risse | FC Cologne | 9 |
| N. Adler | SV Sandhausen | 9 |
| Z. Stieber | SpVgg Greuther Fürth | 9 |
| K. van der Biezen | Karlsruher SC | 8 |
| P. Hofmann | FC Ingolstadt 04 | 8 |
| F. Bartels | FC St. Pauli | 7 |
| M. Hartmann | FC Ingolstadt 04 | 7 |
| B. Halloran | Fortuna Düsseldorf | 6 |
| D. Epstein | FSV Frankfurt | 6 |
| D. Nazarov | Karlsruher SC | 6 |
| E. Kachunga | Paderborn | 6 |
| G. Koçer | Erzgebirge Aue | 6 |
| J. Wurtz | Paderborn | 6 |