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| Player | Team | Goals |
|---|---|---|
| D. Stroh-Engel | SV Darmstadt 98 | 27 |
| D. Frahn | RB Leipzig | 19 |
| K. Onuegbu | MSV Duisburg | 14 |
| D. Kaiser | RB Leipzig | 13 |
| M. Schnatterer | 1. FC Heidenheim | 13 |
| A. Fink | Chemnitzer FC | 12 |
| M. Ducksch | Borussia Dortmund II | 12 |
| T. Furuholm | Hallescher FC | 12 |
| V. Marchese | Stuttgarter Kickers | 12 |
| A. Amachaibou | SSV Jahn Regensburg | 11 |
| A. Grimaldi | VfL Osnabrück | 11 |
| F. Luz | SV Elversberg | 11 |
| S. Bertram | Hallescher FC | 11 |
| A. Voglsammer | SpVgg Unterhaching | 10 |
| D. Blacha | Hansa Rostock | 10 |
| M. Heider | Holstein Kiel | 10 |
| T. Jänicke | SV Wehen | 10 |
| Vunguidica | SV Wehen | 10 |
| Y. Poulsen | RB Leipzig | 10 |
| C. Kammlott | FC Rot-Weiß Erfurt | 9 |
| D. Grote | Preußen Münster | 9 |
| M. Grüttner | Stuttgart II | 9 |
| P. Testroet | VfL Osnabrück | 9 |
| S. Morabit | 1. FC Heidenheim | 9 |
| A. Gogia | Hallescher FC | 8 |
| A. Vaccaro | SV Elversberg | 8 |
| C. Burkhard | Wacker Burghausen | 8 |
| F. Sembolo | Hallescher FC | 8 |
| H. Savran | Hansa Rostock | 8 |
| J. Haberer | SpVgg Unterhaching | 8 |