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| Player | Team | Goals |
|---|---|---|
| L. Riglewski | Heimstetten | 16 |
| A. Jabiri | FC Schweinfurt 05 | 13 |
| P. Hasenhüttl | Türkgücü-Ataspor | 13 |
| B. Schnitzer | Viktoria Aschaffenburg | 12 |
| F. Eberle | Eichstätt | 12 |
| A. Lushi | Eichstätt | 11 |
| K. Rabihic | Türkgücü-Ataspor | 11 |
| A. Makarenko | Bayreuth | 10 |
| A. Petrovic | Buchbach | 10 |
| I. Feser | Aubstadt | 10 |
| L. Schleimer | Nürnberg II | 10 |
| M. Strobel | Illertissen | 10 |
| K. Luibrand | Illertissen | 9 |
| M. Gallmaier | Schalding-Heining | 9 |
| M. Malone | Augsburg II | 9 |
| P. Verkamp | Viktoria Aschaffenburg | 9 |
| A. Bošnjak | Wacker Burghausen | 8 |
| D. Niebauer | Garching | 8 |
| E. Gashi | Viktoria Aschaffenburg | 8 |
| I. Knezevic | Bayreuth | 8 |
| L. Mushkolaj | 1860 Rosenheim | 8 |
| P. Federl | Eichstätt | 8 |
| S. Ammari | Wacker Burghausen | 8 |
| C. Fenninger | Bayreuth | 7 |
| D. Majdancevic | 1860 Rosenheim | 7 |
| F. Pieper | FC Schweinfurt 05 | 7 |
| M. Thomann | Aubstadt | 7 |
| P. Harlaß | Nürnberg II | 7 |
| M. Holz | Türkgücü-Ataspor | 6 |
| S. Nappo | Augsburg II | 6 |