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| Player | Team | Goals |
|---|---|---|
| C. Beck | BFC Dynamo | 23 |
| F. Eisele | FC Carl Zeiss Jena | 22 |
| D. Ziane | Lokomotive Leipzig | 21 |
| E. Engelhardt | Energie Cottbus | 19 |
| D. Frahn | SV Babelsberg 03 | 18 |
| D. Scherhant | Hertha BSC II | 16 |
| A. Bolyki | BFC Dynamo | 15 |
| M. Pronichev | Energie Cottbus | 15 |
| N. El-Jindaoui | BAK '07 | 15 |
| T. Gayret | Hertha BSC II | 14 |
| M. Wolfram | FC Carl Zeiss Jena | 13 |
| B. Junge-Abiol | Tennis Borussia | 12 |
| J. Manske | Altglienicke | 12 |
| M. Zimmermann | Auerbach | 12 |
| S. Pfeffer | Lokomotive Leipzig | 12 |
| A. Fiedler | Eilenburg | 11 |
| K. Freiberger | Chemnitzer FC | 11 |
| T. Heike | Germania Halberstadt | 11 |
| T. Nattermann | Lokomotive Leipzig | 11 |
| C. Derflinger | Altglienicke | 10 |
| J. Muiomo | Optik Rathenow | 10 |
| K. Pagliuca | Chemnitzer FC | 10 |
| M. Fragkos | Auerbach | 10 |
| N. Zografakis | Energie Cottbus | 10 |
| R. Gladrow | Tennis Borussia | 10 |
| T. Gözüsirin | Lichtenberg | 10 |
| T. Uzan | Altglienicke | 10 |
| A. Siebeck | BFC Dynamo | 9 |
| D. Becker | Luckenwalde | 9 |
| F. Brügmann | Chemnitzer FC | 9 |