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| Player | Team | Goals |
|---|---|---|
| E. Löder | FC Carl Zeiss Jena | 25 |
| S. Benyamina | Greifswalder FC | 21 |
| T. Heike | Energie Cottbus | 21 |
| T. Ciğerci | Altglienicke | 19 |
| Lucas Falcão | Viktoria Berlin | 15 |
| R. Dadaşov | BFC Dynamo | 14 |
| L. Sirch | Lokomotive Leipzig | 13 |
| M. Seaton | FC Rot-Weiß Erfurt | 13 |
| M. Zimmermann | FSV Zwickau | 13 |
| T. Stockinger | BFC Dynamo | 13 |
| D. Božić | Chemnitzer FC | 12 |
| D. Frahn | SV Babelsberg 03 | 11 |
| A. Trübenbach | ZFC Meuselwitz | 10 |
| C. Flath | Luckenwalde | 10 |
| C. Sezer | FC Carl Zeiss Jena | 10 |
| J. Herrmann | FSV Zwickau | 10 |
| J. Winter | Luckenwalde | 10 |
| L. Damer | Chemnitzer FC | 10 |
| M. Eshele | Greifswalder FC | 10 |
| O. Atilgan | Lokomotive Leipzig | 10 |
| T. Thiele | Energie Cottbus | 10 |
| C. Bibaku | Eilenburg | 9 |
| J. Albrecht | Hansa Rostock II | 9 |
| P. Türpitz | Altglienicke | 9 |
| A. Suljić | BFC Dynamo | 8 |
| F. Hansch | ZFC Meuselwitz | 8 |
| G. Christensen | Hertha BSC II | 8 |
| M. Pourié | Altglienicke | 8 |
| R. Eckardt | ZFC Meuselwitz | 8 |
| R. Hajrulla | FC Rot-Weiß Erfurt | 8 |