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| Player | Team | Goals |
|---|---|---|
| G. Pasas | Larisa | 24 |
| T. Tsirigotis | Iraklis 1908 | 21 |
| C. Okoh | Asteras Tripolis II | 15 |
| G. Manalis | Kifisia | 15 |
| J. Hurtado | PAOK II | 11 |
| K. Kotsopoulos | Kampaniakos Chalastra | 10 |
| M. Heinrich | PAS Giannina | 9 |
| A. Tetteh | Kifisia | 8 |
| K. Kushta | Iraklis 1908 | 8 |
| R. Pettas | Kampaniakos Chalastra | 8 |
| V. Mantzis | PAS Giannina | 8 |
| A. Šapovalov | Niki Volos | 7 |
| D. Mavrias | Ilioupoli | 7 |
| J. Morsay | Kalamata | 7 |
| Jorge Pombo | Kifisia | 7 |
| Josete Miranda | Iraklis 1908 | 7 |
| P. Giakoumakis | Makedonikos Neapolis | 7 |
| G. Manousakis | Kissamikos | 6 |
| G. Pamlidis | Kalamata | 6 |
| I. Varkas | Egaleo | 6 |
| N. Diguiny | Kalamata | 6 |
| P. Moraitis | Larisa | 6 |
| A. Mendes Moreira | Kalamata | 5 |
| D. Kolovos | Panionios | 5 |
| E. Sosa | AEK Athens II | 5 |
| H. Kanis | PAOK II | 5 |
| K. Ketu | Asteras Tripolis II | 5 |
| Miguel Tavares | Panachaiki FC | 5 |
| S. Mourgos | Larisa | 5 |
| S. Šćepović | PAS Giannina | 5 |