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| Player | Team | Goals |
|---|---|---|
| S. Tamura | Nara Club | 15 |
| O. Yamamoto | Omiya Ardija | 10 |
| T. Izumi | Omiya Ardija | 10 |
| Lucas Barcelos | Tokushima Vortis | 10 |
| Y. Toshida | Tegevajaro Miyazaki | 9 |
| R. Kawamoto | FC Gifu | 8 |
| Caprini | Omiya Ardija | 8 |
| H. Yamada | Shonan Bellmare | 8 |
| R. Sugimoto | Sagamihara | 7 |
| Joao Paulo | Yokohama FC | 7 |
| T. Nakashima | Thespakusatsu Gunma | 7 |
| K. Murakoshi | Matsumoto Yamaga | 6 |
| K. Shimizu | Fukushima United | 6 |
| T. Nishino | Tochigi SC | 6 |
| A. Kameda | Kataller Toyama | 6 |
| H. Manabe | Fujieda MYFC | 6 |
| H. Iwabuchi | Vegalta Sendai | 6 |
| K. Fujieda | Matsumoto Yamaga | 6 |
| M. Furukawa | Kataller Toyama | 6 |
| Y. Taguchi | Ehime FC | 6 |
| Y. Naito | Ventforet Kofu | 6 |
| A. Yamanaka | Iwaki | 5 |
| Thonny Anderson | Tokushima Vortis | 5 |
| H. Takeda | Vegalta Sendai | 5 |
| K. Nishizawa | Sagan Tosu | 5 |
| A. Yokoyama | Yokohama FC | 5 |
| D. Sato | Blaublitz Akita | 5 |
| Gustavo Silva | Jubilo Iwata | 5 |
| J. Miyazaki | Tokushima Vortis | 5 |
| K. Nakano | Tochigi SC | 5 |