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Omiya Ardija finished 1st, Jubilo Iwata 2nd.
| # | Team | P | W | D | L | Goals | Pts |
|---|---|---|---|---|---|---|---|
| 1 | Omiya Ardija | 42 | 26 | 8 | 8 | 72:37 | 86 |
| 2 | Jubilo Iwata | 42 | 24 | 10 | 8 | 72:43 | 82 |
| 3 | Avispa Fukuoka | 42 | 24 | 10 | 8 | 63:37 | 82 |
| 4 | Cerezo Osaka | 42 | 18 | 13 | 11 | 57:40 | 67 |
| 5 | Ehime FC | 42 | 19 | 8 | 15 | 47:39 | 65 |
| 6 | V-varen Nagasaki | 42 | 15 | 15 | 12 | 42:33 | 60 |
| 7 | Kitakyushu | 42 | 18 | 5 | 19 | 59:58 | 59 |
| 8 | Tokyo Verdy | 42 | 16 | 10 | 16 | 43:41 | 58 |
| 9 | JEF United Chiba | 42 | 15 | 12 | 15 | 50:45 | 57 |
| 10 | Consadole Sapporo | 42 | 14 | 15 | 13 | 47:43 | 57 |
| 11 | Fagiano Okayama | 42 | 12 | 18 | 12 | 40:35 | 54 |
| 12 | Kanazawa | 42 | 12 | 18 | 12 | 46:43 | 54 |
| 13 | Roasso Kumamoto | 42 | 13 | 14 | 15 | 42:45 | 53 |
| 14 | Tokushima Vortis | 42 | 13 | 14 | 15 | 35:44 | 53 |
| 15 | Yokohama FC | 42 | 13 | 13 | 16 | 33:58 | 52 |
| 16 | Kamatamare Sanuki | 42 | 12 | 15 | 15 | 30:33 | 51 |
| 17 | Kyoto Sanga | 42 | 12 | 14 | 16 | 45:51 | 50 |
| 18 | Thespakusatsu Gunma | 42 | 13 | 9 | 20 | 34:56 | 48 |
| 19 | Mito Hollyhock | 42 | 10 | 16 | 16 | 40:47 | 46 |
| 20 | FC Gifu | 42 | 12 | 7 | 23 | 37:71 | 43 |
| 21 | Oita Trinita | 42 | 8 | 14 | 20 | 41:51 | 38 |
| 22 | Tochigi SC | 42 | 7 | 14 | 21 | 39:64 | 35 |
| Player | Team | Goals |
|---|---|---|
| J. Bothroyd | Jubilo Iwata | 20 |
| D. Mrđa | Omiya Ardija | 19 |
| R. Komatsu | Kitakyushu | 18 |
| Adailton | Jubilo Iwata | 17 |
| M. Oguro | Kyoto Sanga | 16 |