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Consadole Sapporo finished 1st, Shimizu S-pulse 2nd.
| # | Team | P | W | D | L | Goals | Pts |
|---|---|---|---|---|---|---|---|
| 1 | Consadole Sapporo | 42 | 25 | 10 | 7 | 65:33 | 85 |
| 2 | Shimizu S-pulse | 42 | 25 | 9 | 8 | 85:37 | 84 |
| 3 | Matsumoto Yamaga | 42 | 24 | 12 | 6 | 62:32 | 84 |
| 4 | Cerezo Osaka | 42 | 23 | 9 | 10 | 62:46 | 78 |
| 5 | Kyoto Sanga | 42 | 18 | 15 | 9 | 50:37 | 69 |
| 6 | Fagiano Okayama | 42 | 17 | 14 | 11 | 58:44 | 65 |
| 7 | Machida Zelvia | 42 | 18 | 11 | 13 | 53:44 | 65 |
| 8 | Yokohama FC | 42 | 16 | 11 | 15 | 50:51 | 59 |
| 9 | Tokushima Vortis | 42 | 16 | 9 | 17 | 46:42 | 57 |
| 10 | Ehime FC | 42 | 12 | 20 | 10 | 41:40 | 56 |
| 11 | JEF United Chiba | 42 | 13 | 14 | 15 | 52:53 | 53 |
| 12 | Renofa Yamaguchi | 42 | 14 | 11 | 17 | 55:63 | 53 |
| 13 | Mito Hollyhock | 42 | 10 | 18 | 14 | 45:49 | 48 |
| 14 | Montedio Yamagata | 42 | 11 | 14 | 17 | 43:49 | 47 |
| 15 | V-varen Nagasaki | 42 | 10 | 17 | 15 | 39:51 | 47 |
| 16 | Roasso Kumamoto | 42 | 12 | 10 | 20 | 38:53 | 46 |
| 17 | Thespakusatsu Gunma | 42 | 11 | 12 | 19 | 52:66 | 45 |
| 18 | Tokyo Verdy | 42 | 10 | 13 | 19 | 43:61 | 43 |
| 19 | Kamatamare Sanuki | 42 | 10 | 13 | 19 | 43:62 | 43 |
| 20 | FC Gifu | 42 | 12 | 7 | 23 | 47:71 | 43 |
| 21 | Kanazawa | 42 | 8 | 15 | 19 | 36:60 | 39 |
| 22 | Kitakyushu | 42 | 8 | 14 | 20 | 43:64 | 38 |
| Player | Team | Goals |
|---|---|---|
| Tae-Se Jong | Shimizu S-pulse | 26 |
| K. Tokura | Consadole Sapporo | 19 |
| A. Laajab | Yokohama FC | 18 |
| G. Omae | Shimizu S-pulse | 18 |
| R. Nagai | V-varen Nagasaki | 17 |