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| # | Team | P | W | D | L | Goals | Pts |
|---|---|---|---|---|---|---|---|
| 1 | Albirex Niigata | 16 | 10 | 2 | 4 | 23:24 | 32 |
| 2 | Yokohama FC | 16 | 9 | 4 | 3 | 32:17 | 31 |
| 3 | Kataller Toyama | 16 | 9 | 4 | 3 | 29:15 | 31 |
| 4 | Omiya Ardija | 16 | 8 | 6 | 2 | 30:18 | 30 |
| 5 | Tegevajaro Miyazaki | 16 | 8 | 5 | 3 | 26:17 | 29 |
| 6 | Vegalta Sendai | 15 | 8 | 3 | 4 | 23:14 | 27 |
| 7 | Consadole Sapporo | 16 | 8 | 2 | 6 | 22:19 | 26 |
| 8 | Iwaki | 16 | 7 | 2 | 7 | 26:22 | 23 |
| 9 | Jubilo Iwata | 16 | 6 | 5 | 5 | 19:17 | 23 |
| 10 | Shonan Bellmare | 16 | 5 | 8 | 3 | 16:15 | 23 |
| 11 | Oita Trinita | 16 | 5 | 7 | 4 | 19:14 | 22 |
| 12 | Blaublitz Akita | 16 | 5 | 5 | 6 | 18:18 | 20 |
| 13 | Sagan Tosu | 16 | 6 | 2 | 8 | 16:19 | 20 |
| 14 | Montedio Yamagata | 16 | 6 | 1 | 9 | 14:16 | 19 |
| 15 | Tokushima Vortis | 16 | 5 | 2 | 9 | 12:17 | 17 |
| 16 | Fujieda MYFC | 16 | 3 | 7 | 6 | 17:21 | 16 |
| 17 | Vanraure Hachinohe | 16 | 4 | 2 | 10 | 11:26 | 14 |
| 18 | Tochigi City | 16 | 3 | 3 | 10 | 21:31 | 12 |
| 19 | Imabari | 16 | 3 | 3 | 10 | 16:32 | 12 |
| 20 | Ventforet Kofu | 15 | 3 | 3 | 9 | 11:29 | 12 |