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| # | Team | P | W | D | L | Goals | Pts |
|---|---|---|---|---|---|---|---|
| 1 | Hoyo Oita | 30 | 19 | 4 | 7 | 50:24 | 61 |
| 2 | Tochigi SC | 30 | 17 | 8 | 5 | 38:20 | 59 |
| 3 | Parceiro Nagano | 30 | 15 | 7 | 8 | 33:22 | 52 |
| 4 | Blaublitz Akita | 30 | 14 | 8 | 8 | 37:26 | 50 |
| 5 | Kagoshima United | 30 | 15 | 5 | 10 | 39:29 | 50 |
| 6 | Kataller Toyama | 30 | 13 | 10 | 7 | 37:29 | 49 |
| 7 | Fujieda MYFC | 30 | 14 | 3 | 13 | 48:42 | 45 |
| 8 | FC Ryukyu | 30 | 12 | 8 | 10 | 46:46 | 44 |
| 9 | Gamba Osaka U23 | 30 | 10 | 8 | 12 | 42:41 | 38 |
| 10 | Tokyo U23 | 30 | 9 | 9 | 12 | 32:31 | 36 |
| 11 | Sagamihara | 30 | 9 | 8 | 13 | 29:46 | 35 |
| 12 | Cerezo Osaka U23 | 30 | 8 | 8 | 14 | 38:47 | 32 |
| 13 | Grulla Morioka | 30 | 6 | 12 | 12 | 43:47 | 30 |
| 14 | Fukushima United | 30 | 7 | 9 | 14 | 35:44 | 30 |
| 15 | Gainare Tottori | 30 | 8 | 6 | 16 | 30:47 | 30 |
| 16 | YSCC | 30 | 5 | 5 | 20 | 15:51 | 20 |