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| # | Team | P | W | D | L | Goals | Pts |
|---|---|---|---|---|---|---|---|
| 1 | Ehime FC | 38 | 21 | 10 | 7 | 59:48 | 73 |
| 2 | Kagoshima United | 38 | 18 | 8 | 12 | 58:41 | 62 |
| 3 | Kataller Toyama | 38 | 19 | 5 | 14 | 59:48 | 62 |
| 4 | Imabari | 38 | 16 | 11 | 11 | 54:42 | 59 |
| 5 | Nara Club | 38 | 15 | 12 | 11 | 45:32 | 57 |
| 6 | Gainare Tottori | 38 | 14 | 14 | 10 | 57:52 | 56 |
| 7 | Vanraure Hachinohe | 38 | 15 | 11 | 12 | 49:47 | 56 |
| 8 | FC Gifu | 38 | 14 | 12 | 12 | 44:35 | 54 |
| 9 | Matsumoto Yamaga | 38 | 15 | 9 | 14 | 51:47 | 54 |
| 10 | Grulla Morioka | 38 | 15 | 9 | 14 | 48:49 | 54 |
| 11 | Osaka | 38 | 14 | 11 | 13 | 41:38 | 53 |
| 12 | YSCC | 38 | 14 | 10 | 14 | 48:50 | 52 |
| 13 | Azul Claro Numazu | 38 | 15 | 6 | 17 | 48:48 | 51 |
| 14 | Parceiro Nagano | 38 | 13 | 11 | 14 | 52:60 | 50 |
| 15 | Fukushima United | 38 | 12 | 11 | 15 | 37:42 | 47 |
| 16 | Kamatamare Sanuki | 38 | 11 | 11 | 16 | 29:45 | 44 |
| 17 | FC Ryukyu | 38 | 12 | 7 | 19 | 43:61 | 43 |
| 18 | Sagamihara | 38 | 9 | 14 | 15 | 44:48 | 41 |
| 19 | Tegevajaro Miyazaki | 38 | 9 | 12 | 17 | 31:52 | 39 |
| 20 | Kitakyushu | 38 | 7 | 10 | 21 | 33:45 | 31 |