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| Player | Team | Goals |
|---|---|---|
| V. Faskhutdinov | Ryazan | 20 |
| R. Pavlyuchenko | Znamya Noginsk | 17 |
| A. Kutjin | Metallurg Lipetsk | 16 |
| G. Zhuravlev | Ryazan | 16 |
| D. Gribanov | Salyut-Belgorod | 15 |
| D. Degtev | Salyut-Belgorod | 14 |
| K. Korzh | Saturn Ramenskoye | 14 |
| A. Yarkin | Kaluga | 13 |
| I. Khleborodov | FK Sokol Saratov | 12 |
| P. Barbashov | Metallurg Vidnoye | 12 |
| V. Babaev | Metallurg Lipetsk | 12 |
| A. Olenev | Khimki II | 9 |
| S. Kostyukov | Strogino | 9 |
| V. Agalakov | Strogino | 9 |
| R. Izotov | Khimik-Arsenal | 8 |
| S. Radostev | Saturn Ramenskoye | 8 |
| V. Meshkovskiy | Krasnyy-SGAFKST | 8 |
| A. Ovchinnikov | Metallurg Lipetsk | 7 |
| A. Sergulev | Kvant | 7 |
| D. Baranov | Kaluga | 7 |
| D. Ilyukhin | Khimik-Arsenal | 7 |
| M. Shirokov | Saturn Ramenskoye | 7 |
| A. Kanaplin | Strogino | 6 |
| A. Mingazov | Khimik-Arsenal | 6 |
| D. Savin | Znamya Noginsk | 6 |
| E. Matrakhov | Sakhalin | 6 |
| I. Katinovasov | Sakhalin | 6 |
| Y. Marin | Krasnyy-SGAFKST | 6 |
| A. Myazin | Avangard Kursk | 5 |
| D. Anisimov | FK Sokol Saratov | 5 |