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| Player | Team | Goals |
|---|---|---|
| T. Barseghyan | Slovan Bratislava | 13 |
| R. Polievka | Dukla Banská Bystrica | 13 |
| M. Rymarenko | Dukla Banská Bystrica | 12 |
| M. Trusa | Dunajska Streda | 12 |
| D. Strelec | Slovan Bratislava | 11 |
| M. Ďuriš | Spartak Trnava | 10 |
| M. Marcin | Zemplín Michalovce | 10 |
| N. Marcelli | Slovan Bratislava | 10 |
| N. Kupusović | AS Trencin | 10 |
| A. Čavrić | Slovan Bratislava | 9 |
| D. Ďuriš | Žilina | 9 |
| M. Tolić | Slovan Bratislava | 9 |
| Ž. Medved | FK Košice | 9 |
| P. Azango | Spartak Trnava | 8 |
| R. Sanusi | Podbrezová | 7 |
| P. Kováčik | Podbrezová | 6 |
| M. Sauer | Žilina | 6 |
| Y. Andzouana | Dunajska Streda | 6 |
| M. Assinor | Podbrezová | 6 |
| R. Galčík | Podbrezová | 6 |
| R. Ibrahim | AS Trencin | 6 |
| T. Jambor | Žilina | 6 |
| P. Blahút | Podbrezová | 6 |
| P. Iľko 3 | Žilina | 5 |
| A. Gajdoš | AS Trencin | 5 |
| H. Gong | AS Trencin | 5 |
| G. van Kessel | Zemplín Michalovce | 5 |
| D. Smékal | Skalica | 5 |
| Eynel Soares | AS Trencin | 5 |
| H. Addo | Žilina | 5 |