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| # | Team | P | W | D | L | Goals | Pts |
|---|---|---|---|---|---|---|---|
| 1 | Arminia Bielefeld | 38 | 21 | 9 | 8 | 64:36 | 72 |
| 2 | Dynamo Dresden | 38 | 20 | 10 | 8 | 71:40 | 70 |
| 3 | FC Saarbrücken | 38 | 18 | 11 | 9 | 59:47 | 65 |
| 4 | Energie Cottbus | 38 | 18 | 8 | 12 | 64:54 | 62 |
| 5 | Hansa Rostock | 38 | 18 | 6 | 14 | 54:46 | 60 |
| 6 | FC Viktoria Köln | 38 | 18 | 5 | 15 | 59:48 | 59 |
| 7 | Verl | 38 | 15 | 12 | 11 | 62:55 | 57 |
| 8 | Rot-Weiß Essen | 38 | 16 | 8 | 14 | 55:54 | 56 |
| 9 | SV Wehen | 38 | 15 | 10 | 13 | 59:60 | 55 |
| 10 | FC Ingolstadt 04 | 38 | 14 | 12 | 12 | 72:63 | 54 |
| 11 | TSV 1860 München | 38 | 15 | 8 | 15 | 57:61 | 53 |
| 12 | Alemannia Aachen | 38 | 12 | 14 | 12 | 44:44 | 50 |
| 13 | Erzgebirge Aue | 38 | 15 | 5 | 18 | 52:65 | 50 |
| 14 | VfL Osnabrück | 38 | 13 | 9 | 16 | 46:55 | 48 |
| 15 | Stuttgart II | 38 | 12 | 11 | 15 | 49:59 | 47 |
| 16 | Waldhof Mannheim | 38 | 11 | 13 | 14 | 43:45 | 46 |
| 17 | Borussia Dortmund II | 38 | 11 | 10 | 17 | 53:60 | 43 |
| 18 | Hannover 96 II | 38 | 9 | 10 | 19 | 51:70 | 37 |
| 19 | SV Sandhausen | 38 | 9 | 8 | 21 | 49:69 | 35 |
| 20 | SpVgg Unterhaching | 38 | 4 | 13 | 21 | 40:72 | 25 |