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Matsumoto Yamaga finished 1st, Oita Trinita 2nd.
| # | Team | P | W | D | L | Goals | Pts |
|---|---|---|---|---|---|---|---|
| 1 | Matsumoto Yamaga | 42 | 21 | 14 | 7 | 54:34 | 77 |
| 2 | Oita Trinita | 42 | 23 | 7 | 12 | 76:51 | 76 |
| 3 | Yokohama FC | 42 | 21 | 13 | 8 | 63:44 | 76 |
| 4 | Machida Zelvia | 42 | 21 | 13 | 8 | 62:44 | 76 |
| 5 | Omiya Ardija | 42 | 21 | 8 | 13 | 65:48 | 71 |
| 6 | Tokyo Verdy | 42 | 19 | 14 | 9 | 56:41 | 71 |
| 7 | Avispa Fukuoka | 42 | 19 | 13 | 10 | 58:42 | 70 |
| 8 | Renofa Yamaguchi | 42 | 16 | 13 | 13 | 63:64 | 61 |
| 9 | Ventforet Kofu | 42 | 16 | 11 | 15 | 56:46 | 59 |
| 10 | Mito Hollyhock | 42 | 16 | 9 | 17 | 48:46 | 57 |
| 11 | Tokushima Vortis | 42 | 16 | 8 | 18 | 48:42 | 56 |
| 12 | Montedio Yamagata | 42 | 14 | 14 | 14 | 49:51 | 56 |
| 13 | Kanazawa | 42 | 14 | 13 | 15 | 52:48 | 55 |
| 14 | JEF United Chiba | 42 | 16 | 7 | 19 | 72:72 | 55 |
| 15 | Fagiano Okayama | 42 | 14 | 11 | 17 | 39:43 | 53 |
| 16 | Albirex Niigata | 42 | 15 | 8 | 19 | 48:56 | 53 |
| 17 | Tochigi SC | 42 | 13 | 11 | 18 | 38:48 | 50 |
| 18 | Ehime FC | 42 | 12 | 12 | 18 | 34:52 | 48 |
| 19 | Kyoto Sanga | 42 | 12 | 7 | 23 | 40:58 | 43 |
| 20 | FC Gifu | 42 | 11 | 9 | 22 | 44:62 | 42 |
| 21 | Roasso Kumamoto | 42 | 9 | 7 | 26 | 50:79 | 34 |
| 22 | Kamatamare Sanuki | 42 | 7 | 10 | 25 | 28:72 | 31 |
| Player | Team | Goals |
|---|---|---|
| G. Omae | Omiya Ardija | 24 |
| A. Onaiwu | Renofa Yamaguchi | 22 |
| T. Funayama | JEF United Chiba | 19 |
| A. Laajab | Yokohama FC | 17 |
| Douglas Vieira | Tokyo Verdy | 14 |