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| Player | Team | Goals |
|---|---|---|
| G. Omae | Omiya Ardija | 24 |
| A. Onaiwu | Renofa Yamaguchi | 22 |
| T. Funayama | JEF United Chiba | 19 |
| A. Laajab | Yokohama FC | 17 |
| Douglas Vieira | Tokyo Verdy | 14 |
| K. Baba | Oita Trinita | 12 |
| Mateus | Omiya Ardija | 12 |
| M. Oguro | Tochigi SC | 12 |
| N. Fujimoto | Oita Trinita | 12 |
| S. Kobayashi | Montedio Yamagata | 12 |
| Y. Nakashima | Machida Zelvia | 12 |
| Jefferson Baiano | Mito Hollyhock | 11 |
| J. Larrivey | JEF United Chiba | 11 |
| Junior Barros | Ventforet Kofu | 11 |
| K. Furuhashi | FC Gifu | 11 |
| Leandro Domingues | Yokohama FC | 11 |
| R. López | Kyoto Sanga | 11 |
| Serginho | Matsumoto Yamaga | 11 |
| Y. Minagawa | Roasso Kumamoto | 11 |
| An Byong-Jun | Roasso Kumamoto | 10 |
| A. Watanabe | Albirex Niigata | 10 |
| Dudu | Avispa Fukuoka | 10 |
| K. Mitsuhira | Oita Trinita | 10 |
| K. Onose | Renofa Yamaguchi | 10 |
| Y. Goto | Oita Trinita | 10 |
| A. Kawata | Albirex Niigata | 9 |
| David Barral | Tokushima Vortis | 9 |
| H. Ibusuki | JEF United Chiba | 9 |
| R. Ito | Mito Hollyhock | 9 |
| Rodrigo Maranhão | Kanazawa | 9 |