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| # | Team | P | W | D | L | Goals | Pts |
|---|---|---|---|---|---|---|---|
| 1 | Dynamo | 38 | 26 | 9 | 3 | 64:25 | 87 |
| 2 | FC Tosno | 38 | 21 | 12 | 5 | 63:30 | 75 |
| 3 | Enisey | 38 | 19 | 6 | 13 | 54:42 | 63 |
| 4 | Ska-khabarovsk | 38 | 15 | 14 | 9 | 45:33 | 59 |
| 5 | Tambov | 38 | 15 | 12 | 11 | 42:34 | 57 |
| 6 | Spartak Moscow 2 | 38 | 15 | 11 | 12 | 56:43 | 56 |
| 7 | Kuban | 38 | 14 | 13 | 11 | 44:37 | 55 |
| 8 | Shinnik Yaroslavl | 38 | 15 | 9 | 14 | 41:39 | 54 |
| 9 | Tyumen | 38 | 14 | 11 | 13 | 48:43 | 53 |
| 10 | Fakel | 38 | 14 | 11 | 13 | 38:40 | 53 |
| 11 | Khimki | 38 | 11 | 16 | 11 | 40:47 | 49 |
| 12 | Volgar Astrakhan | 38 | 12 | 9 | 17 | 39:49 | 45 |
| 13 | Zenit 2 | 38 | 9 | 16 | 13 | 44:51 | 43 |
| 14 | Baltika | 38 | 9 | 15 | 14 | 25:35 | 42 |
| 15 | Sibir | 38 | 9 | 15 | 14 | 31:46 | 42 |
| 16 | Luch-Energiya | 38 | 9 | 15 | 14 | 27:41 | 42 |
| 17 | Mordovia Saransk | 38 | 11 | 7 | 20 | 39:50 | 40 |
| 18 | FK Sokol Saratov | 38 | 8 | 15 | 15 | 34:53 | 39 |
| 19 | Spartak Nalchik | 38 | 7 | 17 | 14 | 26:37 | 38 |
| 20 | FK Neftekhimik | 38 | 6 | 9 | 23 | 28:53 | 27 |