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| Player | Team | Goals |
|---|---|---|
| K. Panchenko | Dynamo | 24 |
| K. Mamtov | Tyumen | 23 |
| A. Zabolotnyi | FC Tosno | 16 |
| D. Davydov | Spartak Moscow 2 | 13 |
| R. Koryan | Ska-khabarovsk | 12 |
| G. Melkadze | Spartak Moscow 2 | 11 |
| A. Fedchuk | Spartak Moscow 2 | 10 |
| S. Gogniev | Kuban | 10 |
| S. Samodin | Enisey | 10 |
| A. Sutormin | Volgar Astrakhan | 9 |
| D. Klenkin | Tyumen | 9 |
| E. Cebotaru | Sibir | 9 |
| F. Bećiraj | Dynamo | 9 |
| A. Evseev | Zenit 2 | 8 |
| A. Gasilin | Zenit 2 | 8 |
| E. Markov | FC Tosno | 8 |
| J. Lescano | Ska-khabarovsk | 8 |
| M. Biryukov | Fakel | 8 |
| Y. Kazaev | Khimki | 8 |
| I. Temnikov | Dynamo | 7 |
| M. Zemskov | Shinnik Yaroslavl | 7 |
| R. Akbashev | Volgar Astrakhan | 7 |
| S. Shevchuk | Tambov | 7 |
| V. Galysh | FK Sokol Saratov | 7 |
| V. Kamešs | Enisey | 7 |
| A. Kozlov | Enisey | 6 |
| A. Kutjin | FC Tosno | 6 |
| E. Lutsenko | Dynamo | 6 |
| E. Nizamutdinov | Shinnik Yaroslavl | 6 |
| I. Kuzmichev | Khimki | 6 |