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| # | Team | P | W | D | L | Goals | Pts |
|---|---|---|---|---|---|---|---|
| 1 | SSV Ulm 1846 | 38 | 23 | 8 | 7 | 65:38 | 77 |
| 2 | Preußen Münster | 38 | 19 | 10 | 9 | 68:49 | 67 |
| 3 | SSV Jahn Regensburg | 38 | 17 | 12 | 9 | 51:42 | 63 |
| 4 | Dynamo Dresden | 38 | 19 | 5 | 14 | 58:40 | 62 |
| 5 | FC Saarbrücken | 38 | 15 | 15 | 8 | 60:43 | 60 |
| 6 | Erzgebirge Aue | 38 | 16 | 12 | 10 | 51:47 | 60 |
| 7 | Rot-Weiß Essen | 38 | 17 | 8 | 13 | 60:53 | 59 |
| 8 | SV Sandhausen | 38 | 15 | 11 | 12 | 58:57 | 56 |
| 9 | SpVgg Unterhaching | 38 | 16 | 7 | 15 | 50:49 | 55 |
| 10 | FC Ingolstadt 04 | 38 | 14 | 12 | 12 | 65:51 | 54 |
| 11 | Borussia Dortmund II | 38 | 14 | 12 | 12 | 58:53 | 54 |
| 12 | Verl | 38 | 14 | 11 | 13 | 59:56 | 53 |
| 13 | FC Viktoria Köln | 38 | 13 | 10 | 15 | 59:65 | 49 |
| 14 | Arminia Bielefeld | 38 | 11 | 13 | 14 | 48:47 | 46 |
| 15 | TSV 1860 München | 38 | 13 | 7 | 18 | 40:42 | 46 |
| 16 | Waldhof Mannheim | 38 | 11 | 10 | 17 | 51:60 | 43 |
| 17 | Hallescher FC | 38 | 11 | 7 | 20 | 50:68 | 40 |
| 18 | MSV Duisburg | 38 | 8 | 10 | 20 | 41:65 | 34 |
| 19 | VfB Lübeck | 38 | 6 | 14 | 18 | 37:77 | 32 |
| 20 | Freiburg II | 38 | 8 | 6 | 24 | 37:64 | 30 |